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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv3_063120_phgd.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | bHLH | ||||||||
Protein Properties | Length: 262aa MW: 29546.9 Da PI: 5.4375 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.9 | 7.7e-13 | 70 | 117 | 2 | 54 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r h+e+E+rRR+riNs +++Lr++lP K +Ka+ L k+v+ + +L Bv3_063120_phgd.t1 70 RIHHKEAEKRRRERINSHLDRLRSILPCT-----SKTDKATLLSKVVQRVLEL 117 889*************************7.....699******9999877766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.269 | 68 | 117 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.93E-14 | 69 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.01E-11 | 70 | 120 | No hit | No description |
Pfam | PF00010 | 2.3E-10 | 70 | 117 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.3E-13 | 70 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-10 | 74 | 123 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 3.8E-6 | 175 | 227 | No hit | No description |
CDD | cd04873 | 1.55E-7 | 175 | 227 | No hit | No description |
SuperFamily | SSF55021 | 3.81E-6 | 175 | 249 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0009941 | Cellular Component | chloroplast envelope | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MQQFSDDFPA TTSSEMEIYR YLAGGGEVND VVNWPAKFNN KYSSSGSCSA SFYPGFMNET 60 AEAKALAASR IHHKEAEKRR RERINSHLDR LRSILPCTSK TDKATLLSKV VQRVLELKRQ 120 TSEIHELDNM MIPSENDEFA VYIHNNNSNE CDNNEDGDHI NVDSYNDNKL ILKASLCCED 180 RPDLFADLNG VLSSLNMKTL RAEMSSLGGR IQSVFVVSAD NDTQSDECAV FLRDALKGIV 240 QRSGSEERLK RRRRVFDATT DC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 249 | 254 | KRRRRV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010673045.1 | 0.0 | PREDICTED: transcription factor bHLH106 | ||||
Swissprot | O80674 | 1e-52 | BH106_ARATH; Transcription factor bHLH106 | ||||
TrEMBL | A0A0J8FH25 | 0.0 | A0A0J8FH25_BETVU; Uncharacterized protein | ||||
STRING | VIT_08s0040g01240.t01 | 1e-59 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41130.1 | 9e-48 | bHLH family protein |